Allen Institute · 2 weeks ago
Software Engineer II - Computer Vision for Biology
Seattle, WA
Full-time
Hybrid
Entry, Mid Level
$120K/yr - $150K/yr
1+ years expThe Allen Institute is dedicated to advancing bioscience to improve human health. They are seeking a Software Engineer II to develop and optimize image processing pipelines for analyzing large-scale microscopy and video data in collaboration with neuroscientists and computational researchers.
Neuroscience
Responsibilities
Collaborate with scientists and engineers to design and build computer vision algorithms for large scale imaging data
Pilot and implement methods for image analysis: segmentation, registration, pose tracking, object detection, action recognition
Work with a software team to integrate algorithms and software into a broader analytics platform
Follow best practices - write unit and integration tests, participate in code reviews, track issues, version code, manage stage/production environments, write documentation
Share your methods with the community via white papers, conference talks, and journal articles
Qualification
Required
Bachelor's degree in computer science or related field; or equivalent combination of degree and experience
1 year of relevant experience in a software development team
Experience applying computer vision and image processing algorithms to imaging data, including segmentation and linear/nonlinear image registration
Experience applying machine vision and CV libraries (e.g. OpenCV, scikit-image, ANTs, ITK)
Deep experience with Python
Familiarity with modern software development best practices (e.g., git, GitHub)
Preferred
PhD in neuroscience, with substantial experience in software engineering
3 - 5 years of experience in a software development team
Advanced degree in CS, EE, or a discipline
Excellent written and verbal communication skills
Experience with machine learning/AI
Experience with scaling software from local to cluster/cloud-based use
Experience working in a shared code repository
Experience with cloud-based computing (e.g. Amazon S3, Lambda, EMR)
Benefits
Medical
Dental
Vision
Basic life insurance
401k plan
Paid time off
Company
Allen Institute
The Allen Institute is dedicated to answering some of the biggest questions in bioscience and accelerating research worldwide.
501-1000 employees
H1B Sponsorship
Allen Institute has a track record of offering H1B sponsorships. Please note that this does not
guarantee sponsorship for this specific role. Below presents additional info for your
reference. (Data Powered by US Department of Labor)
Distribution of Different Job Fields Receiving Sponsorship
Represents job field similar to this job
Trends of Total Sponsorships
2025 (41)
2024 (33)
2023 (25)
2022 (26)
2021 (17)
2020 (7)
Funding
Current Stage
Late StageLeadership Team
Rui Costa
President and CEO
Andy Hickl
Chief Technology Officer
Recent News
2025-12-25
2025-12-24
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